Serialized Form

Package <Unnamed>
- Class AboutFrame extends javax.swing.JDialog implements Serializable
  - Serialized Fields
    - LOGO_PATH
```
java.lang.String LOGO_PATH
```
      Stores a path to the extreme tomato logo
    - title
```
javax.swing.JLabel title
```
      Holds the title label
    - container
```
javax.swing.JPanel container
```
      Is drawn on by the above two
- Class ConsolePanel extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    - log
```
javax.swing.JTextArea log
```
      Stores the logged messages, line by line.
    - logPanel
```
javax.swing.JScrollPane logPanel
```
      Allows the log to scroll.
- Class LoadFrame extends javax.swing.JDialog implements Serializable
  - Serialized Fields
    - create
```
javax.swing.JButton create
```
      Allow the user to create the net and insert it into the OCRManager
    - cancel
```
javax.swing.JButton cancel
```
      Allow the user to cancel the net creation process and close the dialog
    - learningRate
```
javax.swing.JSpinner learningRate
```
      Allows the user to select what learning rate the whole net is to have
    - backpropMethods
```
java.lang.String[] backpropMethods
```
      Stores the names of the backprop options
    - backprop
```
javax.swing.JComboBox<E> backprop
```
      Lets the user select the backprop method to use.
    - thresholdAlgorithms
```
java.lang.String[] thresholdAlgorithms
```
      Stores the strings describing the thresholding algorithms available
    - threshold
```
javax.swing.JComboBox<E> threshold
```
      Lets the user select a threshold
    - k
```
javax.swing.JSpinner k
```
      Lets the user choose a 'k' value for the threshold
    - OCR
```
OCRManager OCR
```
      Stores a reference to the original OCR manager.
- Class NetCell extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    - neurons
```
javax.swing.JLabel neurons
```
      A label that displays the number of neurons
    - edges
```
javax.swing.JLabel edges
```
      A label that displays the number of edges
    - outputs
```
javax.swing.JLabel outputs
```
      A label that displays the number of outputs
    - inputs
```
javax.swing.JLabel inputs
```
      A label that displays the number of inputs
    - learningRate
```
javax.swing.JLabel learningRate
```
      A label that displays the learning rate.
- Class NetPanel extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    - OCR
```
OCRManager OCR
```
      Stores a reference to the OCR manager
    - netList
```
javax.swing.JList<E> netList
```
      A list which contains all nets in the stack
    - listPanel
```
javax.swing.JScrollPane listPanel
```
      A scrolling pane which allows the net list to scroll
    - pruneVal
```
javax.swing.JSpinner pruneVal
```
      A spinner that allows the user to select which values to prune using
    - prune
```
javax.swing.JButton prune
```
      A button which allows the user to prune the net
    - globalInfo
```
javax.swing.JPanel globalInfo
```
      A panel containing global net info
    - globalInputNeuronCount
```
javax.swing.JLabel globalInputNeuronCount
```
      A label showing the number of global input neurons
    - globalOutputNeuronCount
```
javax.swing.JLabel globalOutputNeuronCount
```
      A label showing the number of total outputs
    - globalNeuronCount
```
javax.swing.JLabel globalNeuronCount
```
      A label showing a global count of all neurons in the stack
    - globalEdgeCount
```
javax.swing.JLabel globalEdgeCount
```
      A label showing a global count of all edges
    - redraw
```
javax.swing.JButton redraw
```
      A button to allow the user to redraw the neural visualiser
    - up
```
javax.swing.JButton up
```
      Allows a user to move a net up in the stack
    - down
```
javax.swing.JButton down
```
      Allows a user to move a net down in the stack
    - remove
```
javax.swing.JButton remove
```
      Allows the user to remove a net from the stack
    - precalc
```
javax.swing.JButton precalc
```
      Allows the user to forcibly update values for the detail view
    - save
```
javax.swing.JButton save
```
      Allows the user to save a net as a file
    - gbc
```
java.awt.GridBagConstraints gbc
```
      A GridBagConstraints object to allow the visaliser to find its proper location during remove and add
- Class NeuralVisualisation extends java.awt.Canvas implements Serializable
  - Serialized Fields
    - NEURON_SIZE
```
double NEURON_SIZE
```
      The size of the neurons, in pixels, diameter.
    - net
```
NeuralNet net
```
      A reference to the net that is used to grab values from.
    - width
```
int width
```
      Holds the width of the current drawing, is used during resizing.
    - height
```
int height
```
      Holds the height of the current drawing, is used during resizing and can tweak the output
    - neurons
```
java.awt.geom.Ellipse2D.Double[] neurons
```
      Holds neurons as part of a parallel array
    - realNeurons
```
Neuron[] realNeurons
```
      Holds real references in a parallel array with the neurons[] item
    - edges
```
java.util.Vector<E> edges
```
      Holds various objects, the type of which is based on the exact index relative to the net structure
    - realEdges
```
java.util.Vector<E> realEdges
```
      Holds edges of various types, based on precise net structure
- Class NeuralVisualisationFrame extends javax.swing.JFrame implements Serializable
  - Serialized Fields
    - netVis
```
NeuralVisualisation netVis
```
- Class NeuronCell extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    - index
```
javax.swing.JLabel index
```
      Shows the index of this weighted node.
    - target
```
javax.swing.JLabel target
```
      Shows the target value of this weighted node.
    - weight
```
javax.swing.JLabel weight
```
      Shows the weight value of this weighted node
- Class NewNetFrame extends javax.swing.JDialog implements Serializable
  - Serialized Fields
    - layerList
```
javax.swing.JList<E> layerList
```
      Stores a list of all layers
    - layerPanel
```
javax.swing.JScrollPane layerPanel
```
      Allows te list of layers to scroll
    - layers
```
java.util.Vector<E> layers
```
      Stores the number of neurons in each layer
    - numberOfNeurons
```
javax.swing.JSpinner numberOfNeurons
```
      Allows the user to select how many neurons are to be in this layer
    - learningRate
```
javax.swing.JSpinner learningRate
```
      Allows the user to select what learning rate the whole net is to have
    - createLayer
```
javax.swing.JButton createLayer
```
      Allows the user to create a new layer
    - removeLayer
```
javax.swing.JButton removeLayer
```
      Allow the user to remove a layer
    - moveLayerUp
```
javax.swing.JButton moveLayerUp
```
      Allow the user to move a layer up
    - moveLayerDown
```
javax.swing.JButton moveLayerDown
```
      Allow the user to move a layer down
    - create
```
javax.swing.JButton create
```
      Allow the user to create the net and insert it into the OCRManager
    - save
```
javax.swing.JButton save
```
      Allow the user to save the net as a file
    - cancel
```
javax.swing.JButton cancel
```
      Allow the user to cancel the net creation process and close the dialog
    - backpropMethods
```
java.lang.String[] backpropMethods
```
      Stores the names of the backprop options
    - backprop
```
javax.swing.JComboBox<E> backprop
```
      Lets the user select the backprop method to use.
    - thresholdAlgorithms
```
java.lang.String[] thresholdAlgorithms
```
      Stores the strings describing the thresholding algorithms available
    - threshold
```
javax.swing.JComboBox<E> threshold
```
      Lets the user select a threshold
    - k
```
javax.swing.JSpinner k
```
      Lets the user choose a 'k' value for the threshold
    - OCR
```
OCRManager OCR
```
      Stores a reference to the original OCR manager.
- Class OCRSwing extends javax.swing.JFrame implements Serializable
  - Serialized Fields
    - OCR
```
OCRManager OCR
```
      The OCRManager that will be passed to all other panels
    - slicePanel
```
SlicePanel slicePanel
```
      A panel where the document can be sliced into Letters
    - receptorPanel
```
ReceptorPanel receptorPanel
```
      The receptor manager
    - netPanel
```
NetPanel netPanel
```
      The net manager panel
    - symbolPanel
```
SymbolPanel symbolPanel
```
      The symol editor panel
    - trainPanel
```
TrainPanel trainPanel
```
      The training manager panel
    - runPanel
```
RunPanel runPanel
```
      The run manager panel
    - menuBar
```
javax.swing.JMenuBar menuBar
```
      The menu bar
    - consolePanel
```
ConsolePanel consolePanel
```
      The console panel
    - resultsPanel
```
ResultsPanel resultsPanel
```
      The p[anel which displays results
    - tabs
```
javax.swing.JTabbedPane tabs
```
      The tab handler which holds all of the panels
- Class ReceptorPanel extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    - receptorView
```
javax.swing.JPanel receptorView
```
      Stores the panel on which the document is drawn
    - receptorPatterns
```
java.lang.String[] receptorPatterns
```
      Stores the names for possible receptor patterns.
    - pattern
```
javax.swing.JComboBox<E> pattern
```
      Allows the user to select the receptor pattern
    - regenerate
```
javax.swing.JButton regenerate
```
      A button which allows the user to prune the net
    - redraw
```
javax.swing.JButton redraw
```
      Allows the user to redraw without regenerating, to view the receptor net
    - load
```
javax.swing.JButton load
```
      Allows the user to load a receptor net.
    - save
```
javax.swing.JButton save
```
      Allows the user to save a receptor net
    - OCR
```
OCRManager OCR
```
      A reference to the OCR manager which controls OCR for this session
- Class ResultsPanel extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    - OCR
```
OCRManager OCR
```
      Holds a reference to the OCR object that is managing the OCR process
    - results
```
javax.swing.JTextArea results
```
      A text area to hold all of the outputs
    - resultsPanel
```
javax.swing.JScrollPane resultsPanel
```
      Allows the results panel to scroll
    - save
```
javax.swing.JButton save
```
      Allows the user to save the output as a file
    - refresh
```
javax.swing.JButton refresh
```
      Allows the user to refresh the output from the OCR manager object
- Class RunPanel extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    - OCR
```
OCRManager OCR
```
      Stores a reference to the OCRManager to run data through
    - progress
```
javax.swing.JProgressBar progress
```
      A progress bar that updates as the analysis runs
    - covarianceWeight
```
javax.swing.JSlider covarianceWeight
```
      Allows the user to select how important the covariance is in the final calculation
    - subtractionWeight
```
javax.swing.JSlider subtractionWeight
```
      Allows the user to select how important the subtractive value is in the final calculation
    - run
```
javax.swing.JButton run
```
      A button that allows the user to run analysis
    - clear
```
javax.swing.JButton clear
```
      A button that allows the user to clear logs
    - log
```
javax.swing.JTextArea log
```
      Stores a log of all events generated during the analysis.
    - logPanel
```
javax.swing.JScrollPane logPanel
```
      Allows the log to scroll
- Class SlicePanel extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    - documentView
```
javax.swing.JPanel documentView
```
      Stores the panel on which the document is drawn
    - documentScroller
```
javax.swing.JScrollPane documentScroller
```
      The scrollable pane where the document panel resides
    - thresholdX
```
javax.swing.JSlider thresholdX
```
      A slider for the X threshold value
    - thresholdY
```
javax.swing.JSlider thresholdY
```
      A slider for the Y threshold value
    - OCR
```
OCRManager OCR
```
      A reference to the OCR manager which controls OCR for this session
- Class SymbolCell extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    - val
```
javax.swing.JLabel val
```
      Shows the value of the symbol to the user
- Class SymbolPanel extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    - OCR
```
OCRManager OCR
```
      Stores a reference to the OCR manager
    - progress
```
javax.swing.JProgressBar progress
```
      A progress bar to monitor symbol analysis progress
    - symbolList
```
javax.swing.JList<E> symbolList
```
      A list of all symbols loaded
    - symbolPanel
```
javax.swing.JScrollPane symbolPanel
```
      Allows the list of symbols to scroll
    - neuronList
```
javax.swing.JList<E> neuronList
```
      A list of all output neuron weights
    - neuronPanel
```
javax.swing.JScrollPane neuronPanel
```
      Allows the list of outputs to scroll
    - symbols
```
Symbol[] symbols
```
      A list of symbols, as taken from the OCRManager, which are currently loaded
    - img
```
javax.swing.JPanel img
```
      A panel on which to draw the images of the symbols
    - add
```
javax.swing.JButton add
```
      A button to add symbols
    - remove
```
javax.swing.JButton remove
```
      A button to remove symbols
    - value
```
javax.swing.JTextField value
```
      A text field to select the value of the current symbol
    - apply
```
javax.swing.JButton apply
```
      A button to apply the typed value
    - analyse
```
javax.swing.JButton analyse
```
      A button to analyse symbol weights against all current nets
    - reset
```
javax.swing.JButton reset
```
      A button to reset the weights
    - symbolEditor
```
javax.swing.JPanel symbolEditor
```
      A panel on which to place all of the symbol related command components
    - weightEditor
```
javax.swing.JPanel weightEditor
```
      A panel on which to place all weighted output editing components
    - weight
```
javax.swing.JSpinner weight
```
      A spinner to select the weight of the current node
    - target
```
javax.swing.JSpinner target
```
      A spinner to select the target value of the current node
    - weightLabel
```
javax.swing.JLabel weightLabel
```
      A label to indicate the weight spinner
    - targetLabel
```
javax.swing.JLabel targetLabel
```
      A label to indicate the targhet spinner
    - applyWeight
```
javax.swing.JButton applyWeight
```
      A button to apply weights
    - refreshWeight
```
javax.swing.JButton refreshWeight
```
      A button to refresh the current values from the selected node
- Class TrainPanel extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    - OCR
```
OCRManager OCR
```
      The OCRManager to be used for training data and nets
    - progress
```
javax.swing.JProgressBar progress
```
      The progress bar to monitor training progress
    - netList
```
javax.swing.JList<E> netList
```
      Stores a list of nets
    - listPanel
```
javax.swing.JScrollPane listPanel
```
      Allows the list of nets to scroll
    - log
```
javax.swing.JTextArea log
```
      Shows a log of all training
    - logPanel
```
javax.swing.JScrollPane logPanel
```
      Allows the output to scroll
    - entropy
```
javax.swing.JSpinner entropy
```
      A spinner to select the amount of noise to add to images
    - entropyLabel
```
javax.swing.JLabel entropyLabel
```
      A lebel to show what the entropy spinner does
    - learningRate
```
javax.swing.JSpinner learningRate
```
      A spinner to allow the user to select the learning rate
    - learningRateLabel
```
javax.swing.JLabel learningRateLabel
```
      A label to indicate the learning rate spinner to the user
    - cycles
```
javax.swing.JSpinner cycles
```
      A spinner to allow the user to select the number of cycles during training
    - cyclesLabel
```
javax.swing.JLabel cyclesLabel
```
      A label to indicate the cycle spinner
    - loops
```
javax.swing.JSpinner loops
```
      A spinner to allow the user to select loops
    - loopsLabel
```
javax.swing.JLabel loopsLabel
```
      A label to indicate the loops selector to users
    - MSEMin
```
javax.swing.JSpinner MSEMin
```
      A spinner to select the target MSE
    - MSEMinLabel
```
javax.swing.JLabel MSEMinLabel
```
      A label to indicate he MSE selector spinner
    - logUpdate
```
javax.swing.JCheckBox logUpdate
```
      Lets the user select whether or not to update the log
    - updateLog
```
boolean updateLog
```
      Holds if the log updates or not
    - applyLR
```
javax.swing.JButton applyLR
```
      A button to apply the learning rate
    - resetLR
```
javax.swing.JButton resetLR
```
      A button to refresh training data form the selected net
    - train
```
javax.swing.JButton train
```
      A button to train the net
    - clear
```
javax.swing.JButton clear
```
      A button to clear the log output
    - trainingStats
```
javax.swing.JPanel trainingStats
```
      A panel in which all training stats are placed
Package NearNeural
- Class NearNeural.IndexOutOfBoundsException extends NeuralNetException implements Serializable
- Class NearNeural.ItemNotFoundException extends NeuralNetException implements Serializable
- Class NearNeural.NeuralNetException extends java.lang.Exception implements Serializable
- Class NearNeural.UnresolvedValueException extends NeuralNetException implements Serializable
- Class NearNeural.ValueOutOfBoundsException extends NeuralNetException implements Serializable
  - Serialized Fields
    - attemptedValue
```
double attemptedValue
```
      Holds the value that was beyond 0 or 1.

Serialized Form

Package &lt;Unnamed&gt;

Class AboutFrame extends javax.swing.JDialog implements Serializable

Serialized Fields

LOGO_PATH

title

container

Class ConsolePanel extends javax.swing.JPanel implements Serializable

Serialized Fields

log

logPanel

Class LoadFrame extends javax.swing.JDialog implements Serializable

Serialized Fields

create

cancel

learningRate

backpropMethods

backprop

thresholdAlgorithms

threshold

k

OCR

Class NetCell extends javax.swing.JPanel implements Serializable

Serialized Fields

neurons

edges

outputs

inputs

learningRate

Class NetPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

OCR

netList

listPanel

pruneVal

prune

globalInfo

globalInputNeuronCount

globalOutputNeuronCount

globalNeuronCount

globalEdgeCount

redraw

up

down

remove

precalc

save

gbc

Class NeuralVisualisation extends java.awt.Canvas implements Serializable

Serialized Fields

NEURON_SIZE

net

width

height

neurons

realNeurons

edges

realEdges

Class NeuralVisualisationFrame extends javax.swing.JFrame implements Serializable

Serialized Fields

netVis

Class NeuronCell extends javax.swing.JPanel implements Serializable

Serialized Fields

index

target

weight

Class NewNetFrame extends javax.swing.JDialog implements Serializable

Serialized Fields

layerList

layerPanel

layers

numberOfNeurons

learningRate

createLayer

removeLayer

moveLayerUp

moveLayerDown

create

save

cancel

Package <Unnamed>